SNP Profiles matching PA 121 [PER]

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 Key

 1234567891011121314
_Input profile
TTCCACGTCCGGAACCAACCGGGGAACC
1._GC-05-011-1-11
TTCCACGTCCGGAACCAACCGGGGAACC
2._GC-05-011-1-11
TTCCACGTCCGGAACCAACCGGGGAACC
3._GC-05-011-1-11
TTCCACGT_GGAACCAACCGGGGAACC
4._PA_121_[PER]
__ACGTCC_AACCAACC__AA_
5._PA_121_[PER]
__ACGTCC_AACCAACC__AA_
6._ICS_1
__ACGTCC_AACCAACC__AA_
7._RUQ_1059
__ACGTCC_AACCAACC__AA_
8._PA_121_[PER]
__ACGTCC_AACCAACC__AA_
9._PA_121_[PER]
__ACGTCC_AACCAACC__AA_
10._PA_121_[PER]
__ACGT__AACCAACC__AA_
11._PA_121_[PER]
__ACGTCC_AA_AACC__AA_
12._RUQ_952
TTCCACGTCTGGAACCGGCCGGGGAACC
13._GC-08-051-1-62
TTCCACGTCCGGAACCAGCCGGGGAACC
14._GC-08-051-1-62
TTCCACGTCCGGAACCAGCCGGGGAACC
15._GC-08-051-1-62
TTCCACGTCCGGAACCAGCCGGGGAACC
16._GC-08-051-1-62
TTCCACGTCCGGAACCAGCCGGGGAACC
17._GC-08-051-1-62
TTCCACGTCCGGAACCAGCCGGGGAACC
18._GC-08-051-1-62
TTCCACGTCCGGAACCAGCCGGGGAACC
19._GC-08-051-1-62
TTCCACGTCCGGAACCAGCCGGGGAACC
20._GC-08-051-1-62
TTCCACGTCCGGAACCAGCCGGGGAACC
21._GC-08-051-1-62
TTCCACGTCCGGAACCAGCCGGGGAACC
22._GC-08-051-1-62
TTCCACGTCCGGAACCAGCCGGGGAACC
23._UF_667
__ACGTCT_AACCAGCC__AA_
24._RUQ_1621
TTCCACGGCCGGAACCGGCCGGGGAACC
25._GC-05-071-2-22
TTCCACGTCCGGAACCAACCGGGGAACC
26._GC-05-071-2-22
TTCCACGTCCGGAACCAACCGGGGAACC
27._GC-05-119-3-21
TTCCACGTCCGGAACCAACCGGGGAACC
28._GC-05-119-3-21
TTCCACGTCCGGAACCAACCGGGGAACC
29._GC-05-119-3-21
TTCCACGTCCGG_CCAACCGGGGAACC
 1516171819202122232425262728
_Input profile
AGAACTGGCGCCTTTTCCGGAGTTAAGG
1._GC-05-011-1-11
AGAACTGGCGCCTTTTCCGGAGTTAAGG
2._GC-05-011-1-11
AGAACTGGCGCCTTTTCCGGAGTTAAGG
3._GC-05-011-1-11
AGAACTGGCGCCTTTTCCGGAGTTAAGG
4._PA_121_[PER]
AGAACTGGCGCC_TT_GG___GG
5._PA_121_[PER]
AGAACTGGCGCC_TT_GG___GG
6._ICS_1
AGAACTGGCGCC_TT_GG___GG
7._RUQ_1059
AGAACTGGCGCC_TT_GG___GG
8._PA_121_[PER]
AGAACTGGCGCC_TT_GG___GG
9._PA_121_[PER]
AGAACTGGCGCC_TT_GG___GG
10._PA_121_[PER]
AGAACTGGCGCC_TT_GG___GG
11._PA_121_[PER]
AGAACTGGCGCC_TT_GG___GG
12._RUQ_952
AAAACTGGCGCCTTTTCCGGAGTTAAGG
13._GC-08-051-1-62
AAACCTGTCGCCTTTTCCGGAGTTAAGG
14._GC-08-051-1-62
AAACCTGTCGCCTTTTCCGGAGTTAAGG
15._GC-08-051-1-62
AAACCTGTCGCCTTTTCCGGAGTTAAGG
16._GC-08-051-1-62
AAACCTGTCGCCTTTTCCGGAGTTAAGG
17._GC-08-051-1-62
AAACCTGTCGCCTTTTCCGGAGTTAAGG
18._GC-08-051-1-62
AAACCTGTCGCCTTTTCCGGAGTTAAGG
19._GC-08-051-1-62
AAACCTGTCGCCTTTTCCGGAGTTAAGG
20._GC-08-051-1-62
AAACCTGTCGCCTTTTCCGGAGTTAAGG
21._GC-08-051-1-62
AAACCTGTCGCCTTTTCCGGAGTTAAGG
22._GC-08-051-1-62
AAACCTGTCGCCTTTTCCGGAGTTAAGG
23._UF_667
AGAACCGGCGCC_TT_GG___GG
24._RUQ_1621
AAACCTGGCGCCTTTTCTGGAGTTAAGG
25._GC-05-071-2-22
AACCCTGTGGCCTTTTCCGGAGTTAAGG
26._GC-05-071-2-22
AACCCTGTGGCCTTTTCCGGAGTTAAGG
27._GC-05-119-3-21
AACCCTGTGGCCTTTTCCGGAGTTAAGG
28._GC-05-119-3-21
AACCCTGTGGCCTTTTCCGGAGTTAAGG
29._GC-05-119-3-21
AACCCTGTGGCCTTTTCCGGAGTTAAGG
 2930313233343536373839404142
_Input profile
CCCCAGCCCCGGGGTTTTCCCTCTGGGG
1._GC-05-011-1-11
CCCCAGCCCCGGGGTTTT_CTCTGGGG
2._GC-05-011-1-11
CCCCAGCCCCGGGGTTTT_CTCTGGGG
3._GC-05-011-1-11
CCCCAGCCCCGGGGTTTT_CTCTGGGG
4._PA_121_[PER]
_CCAG_CC___TT__CTGGGG
5._PA_121_[PER]
_CCAG_CC___TT__CTGGGG
6._ICS_1
_CCAG_CC___TT__CTGGGG
7._RUQ_1059
_CCAG_CC___TT__CTGGGG
8._PA_121_[PER]
_CCAG_CC___TT__CTGGGG
9._PA_121_[PER]
_CCAG_CC___TT__CTGGGG
10._PA_121_[PER]
_CCAG_CC___TT__CTGGGG
11._PA_121_[PER]
_CCAG_CC___TT__CTGGGG
12._RUQ_952
CCCCAGCCCCGGGGTTTTCCCTCTGGGG
13._GC-08-051-1-62
CCCCAGCCCCGGGGTTTT_CCCTGGAG
14._GC-08-051-1-62
CCCCAGCCCCGGGGTTTT_CCCTGGAG
15._GC-08-051-1-62
CCCCAGCCCCGGGGTTTT_CCCTGGAG
16._GC-08-051-1-62
CCCCAGCCCCGGGGTTTT_CCCTGGAG
17._GC-08-051-1-62
CCCCAGCCCCGGGGTTTT_CCCTGGAG
18._GC-08-051-1-62
CCCCAGCCCCGGGGTTTT_CCCTGGAG
19._GC-08-051-1-62
CCCCAGCCCCGGGGTTTT_CCCTGGAG
20._GC-08-051-1-62
CCCCAGCCCCGGGGTTTT_CCCTGGAG
21._GC-08-051-1-62
CCCCAGCCCCGGGGTTTT_CCCTGGAG
22._GC-08-051-1-62
CCCCAGCCCCGGGGTTTT_CCCTGGAG
23._UF_667
_CCAG_CC___TT__CTCGGG
24._RUQ_1621
CCCCAGCCCCGGGGTTTTCCCTCTCCGG
25._GC-05-071-2-22
CCCCAGCTCCGGAGTTTT_CTCTCGGG
26._GC-05-071-2-22
CCCCAGCTCCGGAGTTTT_CTCTCGGG
27._GC-05-119-3-21
CCCCAGCTCCGGAGTTTT_CTCTCGGG
28._GC-05-119-3-21
CCCCAGCTCCGGAGTTTT_CTCTCGGG
29._GC-05-119-3-21
CCCCAGCTCCGGAGTTTT_CTCTCGGG

Input profile: PA_121_[PER] RUQ_1059

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._PA_121_[PER] GC-05-011-1-11

identical
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

2._PA_121_[PER] GC-05-011-1-11

identical
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

3._PA_121_[PER] GC-05-011-1-11

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP3
 Mars, 2018

4._PA_121_[PER]

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5111 1 > FP
 Dapeng Zhang, 2016

5._PA_121_[PER]

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5111 3
 Dapeng Zhang, 2016

6._ICS_1

identical
24 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

7._PA_121_[PER] RUQ_1059

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

8._PA_121_[PER]

identical
24 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P60 102
 Dapeng Zhang, 2016

9._PA_121_[PER]

identical
24 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
Location: C0233
 Dapeng Zhang, 2016

10._PA_121_[PER]

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5111 5 > FP
 Dapeng Zhang, 2016

11._PA_121_[PER]

identical
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D393
 Dapeng Zhang, 2016

12._PA_289_[PER] RUQ_952

95.2 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

13._PA_72_[PER] GC-08-051-1-62

92.7 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

14._PA_72_[PER] GC-08-051-1-62

92.7 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

15._PA_72_[PER] GC-08-051-1-62

92.7 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

16._PA_72_[PER] GC-08-051-1-62

92.7 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

17._PA_72_[PER] GC-08-051-1-62

92.7 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

18._PA_72_[PER] GC-08-051-1-62

92.7 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

19._PA_72_[PER] GC-08-051-1-62

92.7 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

20._PA_72_[PER] GC-08-051-1-62

92.7 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

21._PA_72_[PER] GC-08-051-1-62

92.7 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

22._PA_72_[PER] GC-08-051-1-62

92.7 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

23._UF_667

91.7 %
24 shared markers

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Indonesian Coffee and Cocoa Research Institute (ICCRI), Indonesia
Location: KW 292 I-042
 Dapeng Zhang, 2016

24._PA_299_[PER] RUQ_1621

90.5 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

25._MO_9 GC-05-071-2-22

90.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

26._MO_9 GC-05-071-2-22

90.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

27._MO_9 GC-05-119-3-21

90.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

28._MO_9 GC-05-119-3-21

90.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

29._MO_9 GC-05-119-3-21

90 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

 

  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484